Free Access
Issue |
Aquat. Living Resour.
Volume 33, 2020
|
|
---|---|---|
Article Number | 11 | |
Number of page(s) | 9 | |
DOI | https://doi.org/10.1051/alr/2020012 | |
Published online | 22 September 2020 |
- Almerón-Souza F, Sperb C, Castilho CL, Figueiredo PI, Gonçalves LT, Machado R, Fagundes NJ. 2018. Molecular Identification of Shark Meat From Local Markets in Southern Brazil Based on DNA Barcoding: Evidence for Mislabeling and Trade of Endangered Species. Front Genetics 9. [Google Scholar]
- Bariche M, Torres M, Smith C, Sayar N, Azzurro E, Baker R, Bernardi G. 2015. Red Sea fishes in the Mediterranean Sea: a preliminary investigation of a biological invasion using DNA barcoding. J Biogeogr 42: 2363–2373. [Google Scholar]
- Bhattacharya M, Sharma AR, Patra BC, Sharma G, Seo EM, Nam JS, Lee SS. 2016. DNA barcoding to fishes: current status and future directions. Mitochondrial DNA Part A 27: 2744–2752. [CrossRef] [Google Scholar]
- Bogorodsky SV, Randall JE. 2019. Endemic Fishes of the Red Sea. In Oceanographic and Biological Aspects of the Red Sea 239–265. Cham: Springer. [CrossRef] [Google Scholar]
- Borsa P, Hsiao DR, Carpenter KE, Chen WJ. 2013. Cranial morphometrics and mitochondrial DNA sequences distinguish cryptic species of the longface emperor (Lethrinus olivaceus), an emblematic fish of Indo-West Pacific coral reefs. Comp Rend Biol 336: 505 –514. [CrossRef] [Google Scholar]
- Colborn J, Crabtree RE, Shaklee JB, Pfeiler E, Bowen BW. 2001. The evolutionary enigma of bonefishes (Albula spp.): cryptic species and ancient separations in a globally distributed shorefish. Evolution 55: 807–820. [CrossRef] [PubMed] [Google Scholar]
- Corsini-Foka M, Kondilatos G, Economidis PS. 2004. Occurrence of the lessepsian species Portunus pelagicus (Crustacea) and Apogon pharaonis (Pisces) in the marine area of Rhodes Island. Mediterranean Mar Sci 5: 83–90. [CrossRef] [Google Scholar]
- Darriba D, Taboada GL, Doallo R, Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 9: 772. [Google Scholar]
- Di Pinto A, Marchetti P, Mottola A, Bozzo G, Bonerba E, Ceci E, Tantillo G. 2015. Species identification in fish fillet products using DNA barcoding. Fish Res 170: 9–13. [Google Scholar]
- Do TD, Choi TJ, Kim JI, An HE, Park YJ, Karagozlu MZ, Kim CB. 2019. Assessment of marine fish mislabeling in South Korea's markets by DNA barcoding. Food Control 100: 53–57. [Google Scholar]
- Eschmeyer WN, Fricke R, Fong GD, Polack DA. 2010. Marine fish diversity: history of knowledge and discovery (Pisces). Zootaxa 2525: 19–50. [Google Scholar]
- Fadli N, Nor SAM, Othman AS, Sofyan H, Muchlisin ZA. 2020. DNA barcoding of commercially important reef fishes in Weh Island, Aceh, Indonesia. PeerJ 8: e9641. [CrossRef] [PubMed] [Google Scholar]
- FAO 2010–2020. Fishery and Aquaculture Country Profiles. Egypt (2010). Country Profile Fact Sheets. In: FAO Fisheries Division [online]. Rome. Updated 1 May 2010. [Cited 29 August 2020]. http://www.fao.org/fishery/ [Google Scholar]
- Galal-Khallaf A, Ardura A, Mohammed-Geba K, Borrell YJ, Garcia-Vazquez E. 2014. DNA barcoding reveals a high level of mislabeling in Egyptian fish fillets. Food Control 46: 441 –445. [Google Scholar]
- Galal-Khallaf A, Mohammed-Geba K, Osman AG, AbouelFadl KY, Borrell YJ, Garcia-Vazquez E. 2017. SNP-based PCR-RFLP, T-RFLP and FINS methodologies for the identification of commercial fish species in Egypt. Fish Res 185: 34–42. [Google Scholar]
- Galal-Khallaf A, Osman AG, El-Ganainy A, Farrag MM, Mohammed-AbdAllah E, Moustafa MA, Mohammed-Geba K. 2019. Mitochondrial genetic markers for authentication of major Red Sea grouper species (Perciformes: Serranidae) in Egypt: A tool for enhancing fisheries management and species conservation. Gene 689: 235 –245. [Google Scholar]
- Girard MG, Davis MP, Smith WL. 2020. The Phylogeny of Carangiform Fishes: Morphological and Genomic Investigations of a New Fish Clade. Copeia 108: 265–298. [Google Scholar]
- Gray JS. 1997. Marine biodiversity: patterns, threats and conservation needs. Biodivers Conserv 6: 153–175. [Google Scholar]
- Hassan M, Harmelin-Vivien M, Bonhomme F. 2003. Lessepsian invasion without bottleneck: example of two rabbitfish species (Siganus rivulatus and Siganus luridus). J Exp Mar Biol Ecol 291: 219–232. [Google Scholar]
- Hebert PD, Cywinska A, Ball SL. 2003. Biological identifications through DNA barcodes. Proc Biol Sci R Soc 270: 313–321. [CrossRef] [Google Scholar]
- Hu Y, Huang SY, Hanner R, Levin J, Lu X. 2018. Study of fish products in Metro Vancouver using DNA barcoding methods reveals fraudulent labeling. Food Control 94: 38–47. [Google Scholar]
- Hubert N, Meyer CP, Bruggemann HJ, Guerin F, Komeno RJ, Espiau B, Planes S. 2012. Cryptic diversity in Indo-Pacific coral-reef fishes revealed by DNA-barcoding provides new support to the centre-of-overlap hypothesis. PLoS one 7: e28987. [CrossRef] [PubMed] [Google Scholar]
- Hulme PE, Bacher S, Kenis M, Klotz S, Kuhn I, Minchin D, Nentwig W, Olenin S, Panov V, Pergl J, Pyšek P, Roques A, Sol D, Solarz W, Vila M. 2008. Grasping at the routes of biological invasions: a framework for integrating pathways into policy. J Appl Ecol 45: 403–414. [Google Scholar]
- Keat-Chuan Ng C, Aun-Chuan Ooi P, Wong WL, Khoo G. 2017. A review of fish taxonomy conventions and species identification techniques. Surv Fish Sci 4: 54–93. [Google Scholar]
- Krishnamurthy PK, Francis RA. 2012. A critical review on the utility of DNA barcoding in biodiversity conservation. Biodivers Conserv 21 : 1901–1919. [Google Scholar]
- Lakra WS, Verma MS, Goswami M, Lal KK, Mohindra V, Punia P, et al. 2011. DNA barcoding Indian marine fishes. Mol Ecol Resour 11: 60 –71. [Google Scholar]
- Meyer CP, Paulay G. 2005. DNA barcoding: error rates based on comprehensive sampling. PLoS Biol 3: e422. [CrossRef] [PubMed] [Google Scholar]
- Mohammed-Geba K, Hassab El-Nabi SE, El-Desoky MS. 2016. Development of cytochrome-c-oxidase 1 specific primers for genetic discrimination of the European eel Anguilla anguilla (Linnaeus, 1758). J Biosci Appl Res 2: 258 –262. [CrossRef] [Google Scholar]
- Pandey PK, Singh YS, Tripathy PS, Kumar R, Abujam SK, Parhi J. 2020. DNA Barcoding and Phylogenetics of Freshwater Fish Fauna of Ranganadi River, Arunachal Pradesh. Gene 144860. [Google Scholar]
- Priest MA, DiBattista JD, McIlwain JL, Taylor BM, Hussey NE, Berumen ML. 2016. A bridge too far: dispersal barriers and cryptic speciation in an Arabian Peninsula grouper (Cephalopholis hemistiktos). J Biogeogr 43: 820 –832. [Google Scholar]
- Rambaut A. 2009. FigTree, version 1.3. 1. Computer program distributed by the author, website: http://treebioedacuk/software/figtree/ [accessed January 4, 2011]. [Google Scholar]
- Rambaut A, Drummond AJ, Xie D, Baele G., Suchard MA. 2018. Posterior summarization in Bayesian phylogenetics using Tracer 1.7. System Biol 67: 901–904. [Google Scholar]
- Roberts CM, McClean CJ, Veron JEN, et al. 2002. Marine biodiversity hotspots and conservation priorities for tropical reefs. Science 295: 1280–1284. [Google Scholar]
- Ronquist F, Teslenko M, van der Mark P, Ayres D, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. System Biol 61: 539–542. [CrossRef] [PubMed] [Google Scholar]
- Rozas J, Ferrer-Mata A, Sánchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, Sánchez-Gracia A. 2017. DnaSP 6: DNA sequence polymorphism analysis of large datasets. Mol Biol Evol 34: 3299–3302. [CrossRef] [PubMed] [Google Scholar]
- Sirna Terranova M, Lo Brutto S, Arculeo M, Mitton JB. 2006. Population structure of Brachidontes variabilis (P. Fisher, 1870) (Bivalvia, Mytilidae) in the Mediterranean Sea and evolution of a novel mtDNA polymorphism. Mar Biol 150: 89–101. [Google Scholar]
- Sonnewald M, El-Sherbiny MM. 2017. Editorial: Red Sea biodiversity. Mar Biodiver 47: 991–993. [CrossRef] [Google Scholar]
- Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30: 2725 –2729. [CrossRef] [PubMed] [Google Scholar]
- Thomas Jr RC, Willette DA, Carpenter KE, Santos MD. 2014. Hidden diversity in sardines: genetic and morphological evidence for cryptic species in the goldstripe sardinella, Sardinella gibbosa (Bleeker, 1849). PloS ONE 9: e84719. [CrossRef] [PubMed] [Google Scholar]
- Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl Acids Res 22: 4673–4680. [CrossRef] [PubMed] [Google Scholar]
- Vella A, Vella N, Schembri S. 2017. A molecular approach towards taxonomic identification of elasmobranch species from Maltese fisheries landings. Mar Genomics 36: 17 –23. [Google Scholar]
- Veron JEN, Devantier LM, Turak E. et al., 2009. Delineating the coral triangle. Galaxea. J Coral Reef Studies 11: 91–100. [CrossRef] [Google Scholar]
- Ward RD, Zemlak TS, Innes BH, Last P, Hebert PDN. 2005 DNA barcoding Australia's fish species. Philos Trans Royal Soc B 360: 1847–1857. [Google Scholar]
- Ward RD, Holmes BH, White WT, Last PR. 2008. DNA barcoding Australasian chondrichthyans: results and potential uses in conservation. Mar Freshw Res 59: 57 –71. [Google Scholar]
Current usage metrics show cumulative count of Article Views (full-text article views including HTML views, PDF and ePub downloads, according to the available data) and Abstracts Views on Vision4Press platform.
Data correspond to usage on the plateform after 2015. The current usage metrics is available 48-96 hours after online publication and is updated daily on week days.
Initial download of the metrics may take a while.