Physiomar 17
Free Access
Aquat. Living Resour.
Volume 32, 2019
Physiomar 17
Article Number 3
Number of page(s) 7
Published online 12 February 2019
  • Altschul S, Gish W, Miller W, Myers E, Lipman D. 1990. Basic local alignment search tool. J Mol Biol 215: 403–410. [Google Scholar]
  • Arnqvist G, Dowling D, Eady P, Gay L, Tregenza T, Tuda M, Hosken D. 2010. Genetic architecture of metabolic rate: environment specific epistasis between mitochondrial and nuclear genes in an insect. Evolution 64: 3354–3363. [PubMed] [Google Scholar]
  • Bachelet G. 1980. Growth and recruitment of the tellinid bivalve Macoma balthica at the southern limit of its geographical distribution, the Gironde Estuary (SW France). Mar Biol 59: 105–117. [Google Scholar]
  • Barreto FS, Moy GW, Burton RS. 2011. Interpopulation patterns of divergence and selection across the transcriptome of the copepod Tigriopus californicus . Mol Ecol 20: 560–572. [CrossRef] [PubMed] [Google Scholar]
  • Becquet V, Simon-Bouhet B, Pante E, Hummel H, Garcia P. 2012. Glacial refugium versus range limit: conservation genetics of Macoma balthica, a key species in the Bay of Biscay (France). J Exp Mar Biol Ecol 432–433: 73–82. [Google Scholar]
  • Bromberg Y, Rost B. 2007. SNAP: predict effect of non-synonymous polymorphisms on function. Nucleic Acids Res 35: 3823–3835. [CrossRef] [PubMed] [Google Scholar]
  • Caddy JF. 1967. Development of mantle organs, feeding and locomotion in postlarval Macoma balthica (L.) (Lamellibranchiata). Can J Zool 47: 609–617. [Google Scholar]
  • Capriotti E, Fariselli P, Casadio R. 2005. I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. Nucleic Acids Res 33: W306–310. [CrossRef] [PubMed] [Google Scholar]
  • Charif D, Lobry J. SeqinR 1.0-2: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis, in: U. Bastolla, M. Porto, H. Roman, M. Vendruscolo (Eds.), Structural Approaches to Sequence Evolution: Molecules, Networks, Populations, Biological and Medical Physics, Biomedical Engineering. Springer Verlag, New York, 2007, pp. 207–232. [Google Scholar]
  • Dahlhoff E, Somero G. 1993. Effects of temperature on mitochondria from abalone (genus Haliotis): adaptive plasticity and its limits. J Exp Biol 185: 151–168. [Google Scholar]
  • Dong Y, Somero GN. 2009. Temperature adaptation of cytosolic malate dehydrogenases of limpets (genus Lottia): differences in stability and function due to minor changes in sequence correlate with biogeographic and vertical distributions. J Exp Biol 212: 169–177. [CrossRef] [PubMed] [Google Scholar]
  • Doucet-Beaupré H, Breton S, Chapman EG, Blier PU, Bogan AE, Stewart DT, Hoeh WR. 2010. Mitochondrial phylogenomics of the Bivalvia (Mollusca): searching for the origin and mitogenomic correlates of doubly uniparental inheritance of mtDNA. BMC Evol Biol 10: 50. [CrossRef] [PubMed] [Google Scholar]
  • Ekebom J. 1999. Heterotrophic nanoflagellates and bacteria in sediment of a brackish water sill basin in the Baltic Sea. Hydrobiologia 393: 151–161. [Google Scholar]
  • Foote AD, Morin PA, Durban JW, Pitman RL, Wade P, Willerslev E, Gilbert MTP, da Fonseca RR. 2011. Positive selection on the killer whale mitogenome. Biol Lett 7: 116–118. [CrossRef] [PubMed] [Google Scholar]
  • Goikoetxea N, Borja A, Fontán A, González M, Valencia V. 2009. Trends and anomalies in sea surface temperature, observed over the last 60 years, within the southeastern Bay of Biscay. Cont Shelf Res 29: 1060–1069. [Google Scholar]
  • Hummel H, Bogaards R, Bachelet G, Caron F, Sol J, Amiard-Triquet C. 2000. The respiratory performance and survival of the bivalve Macoma balthica (L.) at the southern limit of its distribution area: a translocation experiment. J Exp Mar Biol Ecol 251: 85–102. [Google Scholar]
  • Jansen JM, Pronker AE, Bonga SW, Hummel H. 2007. Macoma balthica in Spain, a few decades back in climate history. J Exp Mar Biol Ecol 344: 161–169. [Google Scholar]
  • Kimura M. 1977. Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution. Nature 267: 275–276. [CrossRef] [PubMed] [Google Scholar]
  • Kofler R, Vinay Pandey R, Schlötterer C. 2011. PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq). Bioinformatics 27: 3435–3436. [CrossRef] [PubMed] [Google Scholar]
  • Kumar P, Henikoff S, Ng PC. 2009. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc 4: 1073–1081. [CrossRef] [PubMed] [Google Scholar]
  • Luttikhuizen PC, Drent J, Baker AJ. 2003. Disjunct distribution of highly diverged mitochondrial lineage clade and population subdivision in a marine bivalve with pelagic larval dispersal. Mol Ecol 12: 2215–2229. [CrossRef] [PubMed] [Google Scholar]
  • Marchler-Bauer A, Zheng C, Chitsaz F, Derbyshire MK, Geer LY, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Lanczycki CJ, Lu F, Lu S, Marchler GH, Song JS, Thanki N, Yamashita RA, Zhang D, Bryant SH. 2013. CDD: conserved domains and protein three-dimensional structure. Nucleic Acids Res 41: D348–D352. [CrossRef] [PubMed] [Google Scholar]
  • Matsuda C, Endo H, Ohta S, Kagawa Y. 1993. Gene structure of human mitochondrial ATP synthase gamma-subunit. Tissue specificity produced by alternative RNA splicing. J Biol Chem 268: 24950–24958. [PubMed] [Google Scholar]
  • Ng PC, Henikoff S. 2006. Predicting the effects of amino acid substitutions on protein function. Ann Rev Genomics Hum Genet 7: 61–80. [CrossRef] [Google Scholar]
  • Nikula R, Strelkov P, Väinölä R. 2007. Diversity and trans-arctic invasion history of mitochondrial lineages in the North Atlantic Macoma balthica complex (Bivalvia: Tellinidae). Evolution 61: 928–941. [PubMed] [Google Scholar]
  • Nikula R, Strelkov P, Väinölä R. 2008. A broad transition zone between an inner Baltic hybrid swarm and a pure North Sea subspecies of Macoma balthica (Mollusca, Bivalvia). Mol Ecol 17: 1505–1522. [CrossRef] [PubMed] [Google Scholar]
  • Okonechnikov K, Golosova O, Fursov M, UGENE team. 2012. Unipro UGENE: a unified bioinformatics toolkit. Bioinformatics 28: 1166–1167. [Google Scholar]
  • Pante E, Poitrimol C, Saunier A, Becquet V, Garcia P. 2017. Putative sex-linked heteroplasmy in the tellinid bivalve Limecola balthica (linnaeus, 1758). J Molluscan Stud 83: 226–228. [Google Scholar]
  • Pante E, Rohfritsch A, Becquet V, Belkhir K, Bierne N, Garcia P. 2012. SNP detection from De Novo transcriptome sequencing in the bivalve Macoma balthica: marker development for evolutionary studies. PLoS One 7: e52302. [CrossRef] [PubMed] [Google Scholar]
  • Pespeni MH, Palumbi SR. 2013. Signals of selection in outlier loci in a widely dispersing species across an environmental mosaic. Mol Ecol 22: 3580–3597. [CrossRef] [PubMed] [Google Scholar]
  • Rand DM, Haney RA, Fry AJ. 2004. Cytonuclear coevolution: the genomics of cooperation. Trends Ecol Evol 19: 645–653. [CrossRef] [PubMed] [Google Scholar]
  • Rawson PD, Burton RS. 2002. Functional coadaptation between cytochrome c and cytochrome c oxidase within allopatric populations of a marine copepod. Proc Natl Acad Sci USA 99: 12955–12958. [CrossRef] [Google Scholar]
  • Reynolds RW, Smith TM, Liu C, Chelton DB, Casey KS, Schlax MG. 2007. Daily high-resolution-blended analyses for sea surface temperature. J Clim 20: 5473–5496. [Google Scholar]
  • Roy A, Kucukural A, Zhang Y. 2010. I-TASSER: a unified platform for automated protein structure and function prediction. Nat Protoc 5: 725–738. [CrossRef] [PubMed] [Google Scholar]
  • Sanford E, Kelly MW. 2011. Local adaptation in marine invertebrates. Annu Rev Mar Sci 3: 509–535. [CrossRef] [Google Scholar]
  • Saunier A, Garcia P, Becquet V, Marsaud N, Escudié F, Pante E. 2014. Mitochondrial genomes of the Baltic clam Macoma balthica (Bivalvia: Tellinidae): setting the stage for studying mito-nuclear incompatibilities. BMC Evol Biol 14: 259. [CrossRef] [PubMed] [Google Scholar]
  • Sielaff H, Börsch M. 2013. Twisting and subunit rotation in single FOF1-ATP synthase. Philos Trans R Soc Lond Ser B Biol Sci 368: 1471–2970. [CrossRef] [Google Scholar]
  • Silva G, Lima FP, Martel P, Castilho R. 2014. Thermal adaptation and clinal mitochondrial DNA variation of European anchovy. Proc R Soc Lond Ser B Biol Sci 281 (1792). [Google Scholar]
  • Tigano A, Friesen VL. 2016. Genomics of local adaptation with gene flow. Mol Ecol 25: 2144–2164. [CrossRef] [PubMed] [Google Scholar]
  • Tu Q, Yu L, Zhang P, Zhang M, Zhang H, Jiang J, Chen C, Zhao S. 2000. Cloning, characterization and mapping of the human ATP5E gene, identification of pseudogene ATP5EP1, and definition of the ATP5E motif. Biochem J 347: 17–21. [CrossRef] [PubMed] [Google Scholar]
  • Väinölä R. 2003. Repeated trans-Arctic invasions in littoral bivalves: molecular zoogeography of the Macoma balthica complex. Mar Biol 143: 935–946. [Google Scholar]
  • Väinölä R, Varvio S-L. Biosystematics of Macoma balthica in northwestern Europe, in: J. Ryland, P. Tyler (Eds.), Reproduction, Genetics and Distributions of Marine Organisms, 23rd European Marine Biology Symposium. Olsen and Olsen, Fredensborg, 1989, pp. 309–316. [Google Scholar]
  • Zhang Y. 2008. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics 9: 40. [CrossRef] [PubMed] [Google Scholar]
  • Zouros E. 2013. Biparental inheritance through uniparental transmission: the doubly uniparental inheritance (DUI) of mitochondrial DNA. Evol Biol 40: 1–31. [Google Scholar]

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