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Table 3
Outlier SNPs detected using Arlequin, LOSITAN, and BayeScan tests.
| Locus | Hierarchical analysis | FDIST2 | Bayesian | Type | Annotation | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| Obs FST | P | Levels | FST | P | P | log10(PO) | FST | |||
| cgSNP36 | 0.621 | 0.215 | 0.221 | S (Gly) | TPA-inf:carnosine synthase 1-like protein | |||||
| cgSNP82 | 0.181 | 0.03 | 0.03 | 0.181 | 0.994 | 0.669 | 0.306 | 0.249 | S (Ser) | Unknown |
| cgSNP85 | 0.943 | 1.215 | 0.303 | N (Ser/Ile) | Unknown | |||||
| cgSNP254 | 0.162 | 0.03 | 0.03 | 0.163 | 0.985 | S (Arg) | Caltractin-like | |||
| cgSNP273 | 0.214 | 0.012 | 0.012 | 0.214 | 0.996 | 0.754 | 0.486 | 0.268 | S (Val) | UPF0686 protein C11orfl-like protein |
| cgSNP337 | 0.15 | 0.031 | 0.031 | 0.149 | 0.986 | S (Val) | Plasmodium ovale genome assembly | |||
| cgSNP542 | 0.158 | 0.026 | 0.026 | 0.158 | 0.987 | S (Glu) | Kielin/chordin-like protein | |||
| cgSNP549 | 0.153 | 0.987 | S (Ile) | Parasteatoda tepidariorum multiple epidermal growth factor-like domains protein 10 | ||||||
| cgSNP590 | 0.142 | 0.982 | 0.537 | 0.064 | 0.201 | S (Ser) | Macaca fascicularis complete genome | |||
| cgSNP621 | 0.172 | 0.015 | 0.015 | 0.171 | 0.993 | S (Cys) | Ornithine decarboxylase | |||
| cgSNP646 | 0.226 | 0.006 | 0.006 | 0.225 | 0.999 | 1 | 1000 | 0.396 | N (Glu-Gly) | Unknown |
| cgSNP717 | 0.176 | 0.032 | 0.032 | 0.176 | 0.99 | S (Phe) | Acyl-CoA desaturase | |||
| cgSNP779 | S (Lys) | Vacuolar protein sorting-associated protein 29 | ||||||||
| cgSNP791 | 0.144 | 0.981 | N (Arg-Cys) | Isochorismatase domain-containing protein 2 | ||||||
| cgSNP917 | 0.98 | 1.681 | 0.338 | S (Cys) | MAM and LDL-receptor class A domain-containing protein 1-like | |||||
| cgSNP1131 | 0.224 | 0.008 | 0.008 | 0.225 | 0.999 | 0.545 | 0.079 | 0.205 | N (Asp-Asn) | Tupaia chinensis zinc finger CCCH-type, antiviral 1 (ZC3HAV1), transcript variant X3 |
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