Free Access
Aquat. Living Resour.
Volume 30, 2017
Article Number 10
Number of page(s) 8
Published online 24 March 2017
  • Adamkewicz L, Castagna M. 1988. Genetics of shell color and pattern in the bay scallop Argopecten irradians. Heredity 79: 14–17. [CrossRef] [Google Scholar]
  • Allendorf FW. 1986. Genetic drift and the loss of alleles versus heterozygosity. Zool Biol 5: 181–190. [CrossRef] [Google Scholar]
  • Antao T, Lopes A, Lopes RJ, Beja-Pereira A, Luikart G. 2008. LOSITAN: a workbench to detect molecular adaptation based on a Fst-outlier method. BMC Bioinform 9: 323. [CrossRef] [Google Scholar]
  • Beaumont MA, Balding DJ. 2004. Identifying adaptive genetic divergence among populations from genome scans. Mol Ecol 13: 969–980. [CrossRef] [PubMed] [Google Scholar]
  • Bekkevold D, Gross R, Arula T, Helyar SJ, Ojaveer H. 2016. Outlier loci detect intraspecific biodiversity amongst spring and autumn spawning herring across local scales. PLoS ONE 11: e0148499. [CrossRef] [PubMed] [Google Scholar]
  • Brake J, Evans F, Langdon C. 2004. Evidence for genetic control of pigmentation of shell and mantle edge in selected families of Pacific oysters, Crassostrea gigas. Aquaculture 229: 89–98. [CrossRef] [Google Scholar]
  • Chamary JV, Hurst LD. 2004. Similar rates but different modes of sequence evolution in introns and at exonic silent sites in rodents: evidence for selectively driven codon usage. Mol Biol Evol 21: 1014–1023. [CrossRef] [PubMed] [Google Scholar]
  • Cong R, Li Q, Ge J, Kong L, Yu H. 2014. Comparison of phenotypic traits of four shell color families of the Pacific oyster (Crassostrea gigas). J Fish Sci China 21: 494–502 (in Chinese). [Google Scholar]
  • Crooks L, Carlborg Ö, Marklund S, Johansson AM. 2013. Identification of null alleles and deletions from SNP genotypes for an intercross between domestic and wild chickens. G3 6: 1253–1260. [CrossRef] [Google Scholar]
  • Excoffier L, Lischer HE. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10: 564–567. [CrossRef] [PubMed] [Google Scholar]
  • FAO. 2016. Fishery and aquaculture statistics 2014. FAO report. Rome: Food and Agriculture Organization of the United Nations. [Google Scholar]
  • Foll M, Gaggiotti O. 2008. A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics 180: 977–993. [CrossRef] [PubMed] [Google Scholar]
  • Frascaroli E, Schrag TA, Melchinger AE. 2013. Genetic diversity analysis of elite European maize (Zea mays L.) inbred lines using AFLP, SSR, and SNP markers reveals ascertainment bias for a subset of SNPs. Theor Appl Genet 126: 133–141. [CrossRef] [PubMed] [Google Scholar]
  • Hansen MM, Ruzzante DE, Nielsen EE, Mensberg KD. 2001. Brown trout (Salmo trutta) stocking impact assessment using microsatellite DNA markers. Ecol Appl 11: 148–160. [CrossRef] [Google Scholar]
  • Hao Z, Yang L, Zhan Y, et al. 2015. Biochemical components of different colored strains of cultured Japanese Scallop (Mizuhopecten yessoensis) under different cultivation systems. Isr J Aquac Bamidgeh 67: 1189–1197. [Google Scholar]
  • Hedgecock D, Sly F. 1990. Genetic drift and effective sizes of hatchery-propagated stocks of the Pacific oyster Crassostrea gigas. Aquaculture 88: 21–38. [CrossRef] [Google Scholar]
  • Hoang TH, Qin JG, Stone DAJ, Harris JO, Duong DN, Bansemer MS. 2016. Colour changes of greenlip abalone (Haliotis laevigata Donovan) fed fresh macroalgae and dried algal supplement. Aquaculture 456: 16–23. [CrossRef] [Google Scholar]
  • Kalinowski CT, Izquierdo MS, Schuchardt D, Robaina LE. 2007. Dietary supplementation time with shrimp shell meal on red porgy (Pagrus pagrus) skin colour and carotenoid concentration. Aquaculture 272: 451–457. [CrossRef] [Google Scholar]
  • Kobayashi T, Kawahara I, Hasekura O, Kijima A. 2004. Genetic control of bluish shell color variation in the Pacific abalone Haliotis discus hannai. J Shellfish Res 23: 1153–1156. [Google Scholar]
  • Lemer S, Planes S. 2012. Translocation of wild populations: conservation implications for the genetic diversity of the black-lipped pearl oyster Pinctada margaritifera. Mol Ecol 21: 2949–2962. [CrossRef] [PubMed] [Google Scholar]
  • Li Q, Yu H, Yu R. 2006. Genetic variability assessed by microsatellites in cultured populations of the Pacific oyster (Crassostrea gigas) in China. Aquaculture 259: 95–102. [CrossRef] [Google Scholar]
  • Liu X, Wu F, Zhao H, Zhang G, Guo X. 2009. A novel shell color variant of the Pacific abalone Haliotis discus hannai Ino subject to genetic control and dietary influence. J Shellfish Res 28: 419–424. [CrossRef] [Google Scholar]
  • Murray MC, Hare M. 2006. A genomic scan for divergent selection in a secondary contact zone between Atlantic and Gulf of Mexico oysters, Crassostrea virginica. Mol Ecol 15: 4229–4242. [CrossRef] [PubMed] [Google Scholar]
  • Narum SR, Hess JE. 2011. Comparison of FST outlier tests for SNP loci under selection. Mol Ecol Resour 11 (Suppl. 1): 184–194. [CrossRef] [PubMed] [Google Scholar]
  • Nei M, Feldman MW. 1972. Identity of genes by descent within and between populations under mutation and migration pressures. Theor Popul Biol 3: 460–465. [CrossRef] [PubMed] [Google Scholar]
  • Pampoulie C, Jorundsdottir TD, Steinarsson A, Petursdottir G, Stefansson MO, Danielsdottir AK. 2006. Genetic comparison of experimental fanned strains and wild Icelandic populations of Atlantic cod (Gadus morhua L.). Aquaculture 261: 556–564. [CrossRef] [Google Scholar]
  • Primack RB. 1998. Essentials of conservation biology. Sunderland: Sinauer Associates, pp. 253-276. [Google Scholar]
  • Qin Y, Liu X, Zhang H, Zhang G, Guo X. 2007. Identification and mapping of amplified fragment length polymorphism markers linked to shell color in bay scallop, Argopecten irradians irradians (Lamarck, 1819). Mar Biotechnol 9: 66–73. [CrossRef] [PubMed] [Google Scholar]
  • Riquet F, Daguin-Thiébaut C, Ballenghien M, Bierne N, Viard F. 2013. Contrasting patterns of genome-wide polymorphism in the native and invasive range of the marine mollusk Crepidula fornicata. Mol Ecol 22: 1003–1018. [CrossRef] [PubMed] [Google Scholar]
  • Rohfritsch A, Bierne N, Boudry P, Heurtebise S, Cornette F, Lapègue S. 2013. Population genomics shed light on the demographic and adaptive histories of European invasion in the Pacific oyster, Crassostrea gigas. Evol Appl 6: 1064–1078. [PubMed] [Google Scholar]
  • Sokal RR, Rohlf FJ. 1995. Biometry: the principles and practice of statistics in biological research. New York: Freeman and Co, pp. 427–434. [Google Scholar]
  • Song J, Li Q, Kong L, Yu H. 2016. Identification of candidate AFLP markers for shell color of the Pacific oyster (Crassostrea gigas) under artificial selection. Biochem Syst Ecol 66: 209–215. [CrossRef] [Google Scholar]
  • Suzuki M, Nagasawa H. 2013. Mollusk shell structures and their formation mechanism. Can J Zool 91: 349–366. [CrossRef] [Google Scholar]
  • Takezaki N, Nei M, Tamura K. 2010. POPTREE2: software for constructing population trees from allele frequency data and computing other population statistics with Windows-interface. Mol Biol Evol 27: 747–752. [CrossRef] [PubMed] [Google Scholar]
  • Vilas R, Bouza C, Vera M, Millán A, Martínez P. 2010. Variation in anonymous and EST-microsatellites suggests adaptive population divergence in turbot. Mar Ecol Prog Ser 420: 231–239. [CrossRef] [Google Scholar]
  • Vilas R, Vandammeb SG, Vera M, et al. 2015. A genome scan for candidate genes involved in the adaptation of turbot (Scophthalmus maximus). Mar Genomics 23: 77–86. [CrossRef] [PubMed] [Google Scholar]
  • Wang L, Meng Z, Liu X, Zhang Y, Lin H. 2011. Genetic diversity and differentiation of the orange-spotted grouper (Epinephelus coioides) between and within cultured stocks and wild populations inferred from microsatellite DNA analysis. Int J Mol Sci 12: 4378–4394. [CrossRef] [PubMed] [Google Scholar]
  • Wang W, Chen L, Yang P, et al. 2007. Assessing genetic diversity of populations of topmouth culter (Culter alburnus) in China using AFLP markers. Biochem Syst Ecol 35: 662–669. [CrossRef] [Google Scholar]
  • Winkler FM, Estevez BF, Jollan LB, Garrido JP. 2001. Inheritance of the general shell color in the scallop Argopecten purpuratus (Bivalvia: Pectinidae). J Hered 92: 521–525. [CrossRef] [PubMed] [Google Scholar]
  • Xiao J, Cordes JF, Moss JA, Reece KS. 2011. Genetic diversity in U.S. hatchery stocks of Crassostrea ariakensis (Fujita, 1913) and comparison with natural populations in Asia. J Shellfish Res 30: 751–760. [CrossRef] [Google Scholar]
  • Yeh FC, Yang R, Boyle T. 1999. Microsoft Windows-based free ware for population genetic analysis (Release 1.31). Edmonton: University of Alberta. [Google Scholar]
  • Yu H, Gao S, Chen AL, Kong LF, Li Q. 2015a. Genetic diversity and population structure of the ark shell Scapharca broughtonii along the coast of China based on microsatellite. Biochem Syst Ecol 58: 235–241. [CrossRef] [Google Scholar]
  • Yu Q, Li Y, Xing Q, et al. 2015b. Identification of SNPs with different allele frequencies in China and Japan population of Pacific abalone (Haliotis discus hannai). Conserv Genet Resour 7: 837–840. [CrossRef] [Google Scholar]
  • Yu Z, Guo X. 2004. Genetic analysis of selected strains of eastern oyster (Crassostrea virginica Gmelin) using AFLP and microsatellite markers. Mar Biotechnol 6: 575–586. [CrossRef] [PubMed] [Google Scholar]
  • Zhao C, Li Q, Kong LF. 2009. Inheritance of AFLP markers and their use for genetic diversity analysis in wild and farmed scallop (Chlamys farreri). Aquaculture 287: 67–74. [CrossRef] [Google Scholar]
  • Zheng H, Zhang T, Sun Z, Liu W, Liu H. 2013. Inheritance of shell colours in the noble scallop Chlamys nobilis (Bivalve: Pectinidae). Aquac Res 44: 1229–1235. [CrossRef] [Google Scholar]
  • Zhong X, Li Q, Guo X, Yu H, Kong L. 2014a. QTL mapping for glycogen content and shell pigmentation in the Pacific oyster Crassostrea gigas using microsatellites and SNPs. Aquac Int 22: 1877–1889. [CrossRef] [Google Scholar]
  • Zhong X, Li Q, Yu H, Kong L. 2014b. Genetic variation and breeding signature in mass selection lines of the Pacific oyster (Crassostrea gigas) assessed by SNP markers. PLOS ONE 9: e 108256. [Google Scholar]
  • Zou K, Zhang D, Guo H, Zhu C, Li M, Jiang S. 2014. A preliminary study for identification of candidate AFLP markers under artificial selection for shell color in pearl oyster Pinctada fucata. Gene 542: 8–15. [CrossRef] [PubMed] [Google Scholar]

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