Issue
Aquat. Living Resour.
Volume 36, 2023
Topical Issue - NORA 4 - Native Oyster Restoration Alliance 4th Conference
Article Number 11
Number of page(s) 11
DOI https://doi.org/10.1051/alr/2023005
Published online 28 April 2023
  • Arzul I, Langlade A Chollet B, Robert M, Ferrand S, Omnes E, Garcia C. 2011. Can the protozoan parasite Bonamia ostreae infect larvae of flat oysters Ostrea edulis? Veterinary Parasitol 179: 69–76. [CrossRef] [Google Scholar]
  • Besnier F, Glover KA. 2013. ParallelStructure: A R package to distribute parallel runs of the population genetics program STRUCTURE on multi-Core computers. PLoS ONE 8: e70651. [Google Scholar]
  • Colsoul B, Boudry P, Pérez‐Parallé ML, Bratoš Cetinić A, Hugh‐Jones T, Arzul I, Mérou N, Wegner KM, Peter C, Merk V, Pogoda B. 2021. Sustainable large‐scale production of European flat oyster (Ostrea edulis) seed for ecological restoration and aquaculture: a review. Rev Aquac 13: 1423–1468. https://doi.org/10.1111/raq.12529. [CrossRef] [Google Scholar]
  • Culloty SC, Cronin MA, Mulcahy MF. 2004. Potential resistance of a number of populations of the oyster Ostrea edulis to the parasite Bonamia ostreae. Aquaculture 237: 41–58. [Google Scholar]
  • Culloty SC, Mulcahy MF. 2007. Bonamia ostreae in the Native Oyster Ostrea edulis. A Review. Mar Environ Health Series 29: 3–30. [Google Scholar]
  • De Melo CMR, Divilov K, Durland E, Schoolfield B, Davis J, Carnegie RB, Reece KS, Evans F, Langdon C. 2021. Introduction and evaluation on the US West Coast of a new strain (Midori) of Pacific oyster (Crassostrea gigas) collected from the Ariake Sea, southern Japan. Aquaculture 531: 735970. https://doi.org/10.1016/j.aquaculture.2020.735970. [CrossRef] [Google Scholar]
  • Didderen K, Kamermans P, Lengkeek W. 2018. Gemini wind farm oyster pilot Results 2018. Culemborg: Bureau Waardenburg. [Google Scholar]
  • Didderen K, van der Have JTM, Bergsma H, van der Jagt H, Lengkeek W, Kamermans P, van den Brink A, Maathuis M, Sas H. 2019a. Shellfish bed restoration pilots Voordelta, Netherlands Annual report 2018, ARK Report https://www.ark.eu/sites/default/files/media/Schelpdierbanken/Annual_report_Voordelta_2018.pdf [Google Scholar]
  • Didderen K, Lengkeek W, Kamermans P, Deden B, Reuchlin-Hugenholtz E. 2019b. Pilot to actively restore native oyster reefs in the North Sea. Comprehensive report to share lessons learned in 2018. Report 19-013. Bureau Waardenburg, Culemborg. WWF, Zeist. [Google Scholar]
  • Didderen K, Bergsma JH, Kamermans P. 2019c. Offshore flat oyster pilot Luchterduinen wind farm. Results campaign 2 (July 2019) and lessons learned. Report 19–184. Bureau Waardenburg, Culemborg. [Google Scholar]
  • Didderen K, Lengkeek W, Bergsma JH, van Dongen U, Driessen FMF, Kamermans P. 2020. WWF & ARK Borkum Reef Ground oyster pilot: Active restoration of native oysters in the North Sea—Monitoring September 2019. Report 19-227 Bureau Waardenburg, Culemborg. [Google Scholar]
  • Ellis JA, Ong B. 2017. The MassARRAY® system for targeted SNP genotyping. In Genotyping Methods and Protocols, edited by White S, Cantsilieris S. New York, NY: Springer, 2017; pp. 77–94. [CrossRef] [PubMed] [Google Scholar]
  • Engelsma MY, Kerkhoff S, Roozenburg I, Haenen OLM, Van Gool A, Sistermans W, Wijnhoven S, Hummel H. 2010. Epidemiology of Bonamia ostreae infecting European flat oysters Ostrea edulis from Lake Grevelingen, The Netherlands. Mar Ecol Progr Ser 409: 131–142. [CrossRef] [Google Scholar]
  • Engelsma MY, Culloty SC, Sharon A, Lynch SA, Arzul I, Ryan B, Carnegie RB. 2014. Bonamia parasites: a rapidly changing perspective on a genus of important mollusc pathogens. Diseases Aquat Organ 110: 5–23. https://doi.org/10.3354/dao02741 [CrossRef] [PubMed] [Google Scholar]
  • Evanno G, Regnaut S, Goudet J. 2005. Detecting the number of clusters of individuals using the software structure: a simulation study. Mol Ecol 14: 2611–2620. doi.org/10.1111/j.1365-294x.2005.02553.x [CrossRef] [PubMed] [Google Scholar]
  • Flannery G, Lynch SA, Culloty SC. 2016. Investigating the significance of the role of Ostrea edulis larvae in the transmission and transfer of Bonamia ostreae. J Invertebrate Pathol 136: 7–9. [CrossRef] [Google Scholar]
  • Gercken J, Schmidt A. 2014. Current Status of the European Oyster (Ostrea edulis) and Possibilities for Restoration in the German North Sea 2014. Report Bundesambt fur Naturschutz, 88 pp. [Google Scholar]
  • Gundappa MK, Peñaloza C, Regan T, Boutet I, Tanguy A, Houston RD, Bean TP, Macqueen DJ. 2022. Chromosome-level reference genome for European flat oyster (Ostrea edulis L.). Evolut Appl 15: 1713–1729. https://doi.org/10.1111/eva.13460. [CrossRef] [Google Scholar]
  • Gutierrez AP, Turner F, Gharbi K, Talbot R, Lowe NR, Peñaloza C, McCullough M, Prodöhl PA, Bean TP, Houston RD. 2017. Development of a medium density combined-species SNP array for pacific and European Oysters (Crassostrea gigas and Ostrea edulis). G3 Genes|Genomes|Genetics 7: 2209–2218. https://doi.org/10.1534/g3.117.041780 [Google Scholar]
  • Haelters J, Kerckhof F. 2009. Background document for Ostrea edulis and Ostrea edulis beds. Biodiversity Series, OSPAR Commission. [Google Scholar]
  • Haenen OLM, Engelsma MY. 2020. Jaarverslag schelpdierziekten 2019; Resultaten van het onderzoek naar ziekten in schelpdierbestanden van het Grevelingenmeer en de Oosterschelde. Wageningen Bioveterinary Research, WBVR Report 2010660. [Google Scholar]
  • Helm MM, Bourne N, Lovatelli A. 2004. Hatchery culture of bivalves. A practical manual. FAO Fisheries Technical Paper, 471, 176. [Google Scholar]
  • Holbrook Z, Bean TP, Lynch SA, Hauton C. 2021. What do the terms resistance, tolerance, and resilience mean in the case of Ostrea edulis infected by the haplosporidian parasite Bonamia ostreae. J Invertebrate Pathol 182: 107579. https://doi.org/10.1016/j.jip.2021.107579 [CrossRef] [Google Scholar]
  • Houziaux J-S., Kerckhof F, Degrendele K, Roche M, Norro A. 2008. The Hinder Banks Yet an important region for the Belgian marine biodiversity? Final report HINDERS project, Belgian Science Policy Office, pp.249. Available online at URL: Microsoft Word − EV45_FINAL_REPORT.doc (belspo.be). https://www.belspo.be/belspo/organisation/publ/pub_ostc/EV/rappEV45_en.pdf [Google Scholar]
  • Jacobs P, Greeve Y, Sikkema M, Dubbeldam M, Philippart CJM. 2020. Successful rearing of Ostrea edulis from parents originating from the Wadden Sea, the Netherlands. Aquac Rep 18: 100537. https://doi.org/10.1016/j.aqrep.2020.100537 [Google Scholar]
  • Kamermans P, van Duren L, Kleissen F. 2018a. European flat oysters on offshore wind farms: additional locations : opportunities for the development of European flat oyster (Ostrea edulis) populations on planned wind farms and additional locations in the Dutch section of the North Sea. Wageningen Marine Research / Deltares. Report C053/18. dx.doi.org/10.18174/456358 [Google Scholar]
  • Kamermans P, Walles B, Kraan M, van Duren LA, Kleissen F, van der Have TM, Smaal AC, Poelman M. 2018b. Offshore wind farms as potential locations for flat oyster (Ostrea edulis) restoration in the Dutch North Sea. Sustainability 10: 3942. Evolutionary Applicationsdoi:10.3390/su10113942 doi:10.3390/su10113942 [CrossRef] [Google Scholar]
  • Kamermans P, Blanco A, van Dalen P. 2020. Sources of European flat oysters (Ostrea edulis L.) for restoration projects in the Dutch North Sea. Wageningen University & Research rapport C085/20. [Google Scholar]
  • Kerckhof K, Coolen JWP, Rumes B, Degraer S. 2018. Recent findings of wild European flat oysters Ostrea edulis (Linnaeus, 1758) in Belgian and Dutch offshore waters: new perspectives for offshore oyster reef restoration in the southern North Sea Belgian. J Zool https://doi.org/10.26496/bjz.2018.16 [Google Scholar]
  • Kopelman NM, Mayzel J, Jakobsson M, Rosenberg NA, Mayrose I. 2015. Clumpak: A program for identifying clustering modes and packaging population structure inferences across K. Mol Ecol Resour 15: 1179–1191. [CrossRef] [PubMed] [Google Scholar]
  • Li YL, Liu JX. 2018. StructureSelector: a web-based software to select and visualize the optimal number of clusters using multiple methods. Molec Ecol Resourc 18: 176–177. doi.org/10.1111/1755-0998.12719 [CrossRef] [Google Scholar]
  • Lynch SAL, Flannery G, Hugh-Jones T, Hugh-Jones D, Culloty SC. 2014. Thirty-year history of Irish (Rossmore) Ostrea edulis selectively bred for disease resistance to Bonamia ostreae. Diseases Aquat Organ 110: 113–121. [CrossRef] [PubMed] [Google Scholar]
  • Marty G, Bower SM, Clarke K, Meyer G, Lowe G, Osborn A, Chow E, Hannah H, Byrne S, Sojonky K. 2006. Histopathology and a real-time PCR assay for detection of Bonamia ostreae in Ostrea edulis cultured in western Canada. Aquaculture 261: 33–42. [CrossRef] [Google Scholar]
  • Mortensen S, Sælemyr L, Skår CK, Bodvin T, Jelmert A. 2016. The surveillance and control programme for bonamiosis and marteiliosis in European flat oysters (Ostrea edulis) and blue mussels (Mytilus sp.) in Norway 2015, Institute for Marine Research Norway, ISSN 1893–4536 [Google Scholar]
  • Oeth P, del Mistro G, Marnellos G, Shi T, van den Boom D. 2009. Qualitative and quantitative genotyping using single base primer extension coupled with matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MassARRAY). Methods Molec Biol 578: 307–343. [CrossRef] [PubMed] [Google Scholar]
  • Olsen OT. 1883. The piscatorial atlas of the North Sea, English and St. George's Channels. Grimsby, London. [Google Scholar]
  • OYSTERECOVER. 2013. Deliverable 15. Report identifying and describing best performing populations. [Google Scholar]
  • Pichot Y, Comps M, Tigé G, Grizel H, Rabouin MA. 1980. Recherches sur Bonamia ostreae gen. n., sp. n., parasiste nouveau de l'huître plate Ostrea edulis L. Revue des Travaux de l'Institut des Peches Maritimes 43, 131–140. [Google Scholar]
  • Pogoda B, Brown J, Hancock B, Preston J, Pouvreau S, Kamermans P, Sanderson W, von Nordheim H. 2019. The Native Oyster Restoration Alliance (NORA) and the Berlin Oyster Recommendation: bringing back a key ecosystem engineer by developing and supporting best practice in Europe. Aquatic Living Resour 32: 13. https://doi.org/10.1051/alr/2019012 [Google Scholar]
  • Pritchard JK, Stephens M, Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics 155: 945–959. doi.org/10.1093/genetics/155.2.945 [Google Scholar]
  • Råberg L, Graham AL, Read AF. 2008. Decomposing health: tolerance and resistance to parasites in animals. Philos Trans Royal Soc B 364: 37–49. doi:10.1098/rstb.2008.0184 [Google Scholar]
  • Ronza P, Cao A, Robledo D, Gómez-Tato A, Álvarez-Dios J, Hasanuzzaman A, Quiroga M, Villalba A, Pardo B, Martínez P. 2018. Long-term affected flat oyster (Ostrea edulis) haemocytes show differential gene expression profiles from naïve oysters in response to Bonamia ostreae. Genomics 110: 390–398. doi.org/10.1016/j.ygeno.2018.04.002 [CrossRef] [PubMed] [Google Scholar]
  • Sambade, IM, Casanova, A, Blanco, A, Gundappa, MK, Bean, TP, Macqueen, DJ, Houston, RD, Villalba, A, Vera, M, Kamermans, P & Martínez, P (2022), ‘A single genomic region involving a putative chromosome rearrangement in flat oyster (Ostrea edulis) is associated with differential host resilience to the parasite Bonamia ostreae’, Evolutionary Applications, 15:1408–1422 https://doi.org/10.1111/eva.13446 [CrossRef] [PubMed] [Google Scholar]
  • Sas H, Kamermans P, van der Have T, Lengkeek W, Smaal A. 2016. Shellfish reef restoration pilots: Voordelta The Netherlands, Annual report 2016. ARK Report. [Google Scholar]
  • Sas H, Kamermans P, van der Have TM, Christianen MJA, Coolen JWP, Lengkeek W, Didderen K, Driessen F, Bergsma J, van Dalen P, van Gool ACM, van der Pool J, van der Weide BE. 2018. Shellfish bed restoration pilots: Voordelta The Netherlands : Annual report 2017. ARK Report. [Google Scholar]
  • Sas H, Deden B, Kamermans P, zu Ermgassen PSE, Pogoda B, Preston J, Helmer L, Holbrook Z, Arzul I, van der Have T, Villalba A, Colsoul B, Merk V, Lown A, Zwerschke N, Reuchlin E. 2020. Bonamia infection in flat oysters (Ostrea edulis) in relation to European restoration projects. Aquatic Conserv 30: 2150–2162. https://doi.org/10.1002/aqc.3430 [CrossRef] [Google Scholar]
  • Saunders MI, Doropoulos C, Bayraktarov E, Babcock RC, Gorman D, Eger AM, Vozzo ML, Gillies CL, Vanderklift MA, Steven ADL, Bustamante RH, Silliman BR. 2020. Bright spots in coastal marine ecosystems restoration. Curr Biol 30: PR1500–R1510. DOI:https://doi.org/10.1016/j.cub.2020.10.056 [CrossRef] [PubMed] [Google Scholar]
  • Smaal AC, Kamermans P, van der Have TM, Engelsma M, Sas HJW. 2015. Feasibility of Flat Oyster (Ostrea edulis L.) restoration in the Dutch part of the North Sea. IMARES Report C028/15 [Google Scholar]
  • Smaal A, Kamermans P, Kleissen F, van Duren L, van der Have T. 2017. Flat oysters on offshore wind farms : opportunities for the development of flat oyster populations on existing and planned wind farms in the Dutch section of the North Sea. Yerseke: Wageningen Marine Research, (Wageningen Marine Research report C052/17) − 53 [Google Scholar]
  • Suquet M, Gonzales Araya R, Lebrun L, Queau I, Mingant C, Robert R. 2010. Anaesthesia and gonad sampling in the European flat oyster (Ostrea edulis). Aquaculture 308: 196–198. [CrossRef] [Google Scholar]
  • Van Banning P. 1987. Further results of the Bonamia ostreae challenge tests in Dutch oyster culture. Aquaculture 67: 191–194 [CrossRef] [Google Scholar]
  • Van den Brink AM, Maathuis MAM, Kamermans P. 2020. Can off-bottom spat collectors optimise restoration and production of the European flat oyster (Ostrea edulis) in Dutch coastal waters? Aquatic Conserv 30: 2087–2100. http://dx.doi.org/10.1002/aqc.3427 [CrossRef] [Google Scholar]
  • Vera M, Pardo BG, Cao A, Vilas R, Fernández C, Blanco A, Gutierrez AP, Bean TP, Houston RD, Villalba A, Martínez P. 2019. Signatures of selection for bonamiosis resistance in European flat oyster (Ostrea edulis): New genomic tools for breeding programs and management of natural resources. Evolut Appl 00: 1–16. DOI: 10.1111/eva.12832 [Google Scholar]
  • Waller T. 1981. Functional morphology and development of veliger larvae of the European oyster, Ostrea edulis Linne. Smithson Contrib Zool 328: 1–70. [CrossRef] [Google Scholar]

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