Free Access
Issue
Aquat. Living Resour.
Volume 32, 2019
Article Number 8
Number of page(s) 10
DOI https://doi.org/10.1051/alr/2019004
Published online 18 March 2019
  • Avise JC. 2009. Phylogeography: retrospect and prospect. J Biogeogr 36: 3–15. [Google Scholar]
  • Barnes TC, Junge C, Myers SA, Taylor MD, Rogers PJ, Ferguson GJ, Lieschke JA, Donnellan SC, Gillanders BM. 2015. Population structure in a wide-ranging coastal teleost (Argyrosomus japonicus, Sciaenidae) reflects marine biogeography across southern Australia. Mar Freshw Res 67: 1103–1113. [Google Scholar]
  • Benzie JAH. 1999. Major genetic differences between crown-of-thorns starfish (Acanthaster planci) populations in the Indian and Pacific Oceans. Evolution 53: 1782–1795. [PubMed] [Google Scholar]
  • Benzie JAH, Ballment E, Forbes AT, Demetriades NT, Sugama Haryanti K, Moria S. 2002. Mitochondrial DNA variation in Indo–Pacific populations of the giant tiger prawn, Penaeus monodon . Mol Ecol 11: 2553–2569. [CrossRef] [PubMed] [Google Scholar]
  • Bermingham ES, McCaVerty A, Martin P. 1997. Fish biogeography and molecular clocks: perspectives from the Panamanian Isthmus, in: T. Kocher, C. Stepien (Eds.), Molecular Systematics of Fishes, Academic Press, San Diego, pp. 113–126. [CrossRef] [Google Scholar]
  • Bowen BW, Bass AL, Rocha LA, Grant WS, Robertson DR. 2001. Phylogeography of the trumpet fishes (Aulostomus): ring species complex on a global scale. Evolution 55: 1029–1039. [PubMed] [Google Scholar]
  • Chenoweth SF, Hughes JM, Keenan CP, Lavery S. 1998. When oceans meet: a teleost shows secondary intergradation at an Indian-Pacific interface. Proc R Soc Lond B Biol Sci 265: 415–420. [Google Scholar]
  • Divya PR, Vineesh N, Ayyathurai K, Basheer VS, Achamveettil G. 2018. Population structure of Spanish mackerel Scomberomorus commerson (Lacepède, 1800) in the Northern Indian Ocean determined using microsatellite markers. Aquat Living Resour 31: 22. DOI: 10.1051/alr/2018011. [CrossRef] [Google Scholar]
  • Drummond AJ, Suchard MA, Xie D, Rambaut A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol 29: 1969–1973. [CrossRef] [PubMed] [Google Scholar]
  • Excoffier L, Laval G, Schneider S. 2005. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinform 1: 47–50. [CrossRef] [Google Scholar]
  • Galloway RW, Kemp EM. 1981. Late Cainozoic environments in Australia, in: A. Keast (Ed.), Ecological Biogeography of Australia, Dr. W. Junk Publishers, Hague, 51–80. [CrossRef] [Google Scholar]
  • Giles JL, Ovenden JR, Almojil D, Garvilles E, Khampetch KO, Manjebrayakath H, Riginos C. 2014. Extensive genetic population structure in the Indo-West Pacific spot-tail shark, Carcharhinus sorrah . Bull Mar Sci 90: 427–454. [CrossRef] [Google Scholar]
  • Gopurenko D, Hughes JM. 2002. Regional patterns of genetic structure among Australian populations of the mud crab, Scylla serrata (Crustacea: Decapoda): evidence from mitochondrial DNA. Mar Freshw Res 53: 849–857. [Google Scholar]
  • Goudent J. 2001. FSTAT, Version 2.9.3: a program to estimate and test gene diversities and fixation indices. [Google Scholar]
  • Koizumi I, Yamamoto S, Maekawa K. 2006. Decomposed pairwise regression analysis of genetic and geographic distances reveals a metapopulation structure of stream-dwelling Dolly Varden charr. Mol Ecol 15: 3175–3189. [CrossRef] [PubMed] [Google Scholar]
  • Latch EK, Dharmarajan G, Glaubitz JC, Rhodes OE, Jr. 2006. Relative performance of Bayesian clustering software for inferring population substructure and individual assignment at low levels of population differentiation. Conserv Genet 7: 295–302. [Google Scholar]
  • Lavery S, Moritz C, Fielder DR. 1996. Indo-Pacific population structure and evolutionary history of the coconut crab Birgus latro . Mol Ecol 5: 557–570. [Google Scholar]
  • Liu J, Li C, Li X. 2002. Studies on Chinese pomfret fishes of the genus Pampus (Pisces: Stromateidae). Studia Marina Sinica 44: 240–252. [Google Scholar]
  • Liu J, Gao T, Wu S, Zhang Y. 2007. Pleistocene isolation in the Northwestern Pacific marginal seas and limited dispersal in a marine fish, Chelon haematocheilus (Temminck & Schlegel, 1845). Mol Ecol 16: 275–288. [CrossRef] [PubMed] [Google Scholar]
  • Liu M, Lin L, Gao T, Yanagimoto T, Sakurai Y, Grant WS. 2012. What maintains the central North Pacific genetic discontinuity in Pacific herring? PLoS One 7: e50340. DOI: 10.1371/journal.pone.0050340. [CrossRef] [PubMed] [Google Scholar]
  • Lu P, Yorkson M, Morden CW. 2016. Population genetics of the endemic Hawaiian species Chrysodracon hawaiiensis and Chrysodracon auwahiensis (Asparagaceae): insights from RAPD and ISSR variation. Int J Mol Sci 17: 1341. DOI: 10.3390/ijms17081341. [Google Scholar]
  • Luikart G, Cornuet JM. 1998. Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data. Conserv Biol 12: 228–237. [Google Scholar]
  • Ovenden JR. 2013. Crinkles in connectivity: combining genetics and other types of biological data to estimate movement and interbreeding between populations. Mar Freshw Res 64: 201–207. [Google Scholar]
  • Pillai VN, Menon NG. 2000. Marine fisheries research and management, Central Marine Fisheries Research Institute, Kochi, India, pp. 364–373. [Google Scholar]
  • Piry S, Luikart G, Cornuet JM. 1999. BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data. J Hered 90: 502–503. [Google Scholar]
  • Pritchard JK, Stephens M, Rosenberg NA, Donnelly P. 2000. Association mapping in structured populations. Am J Hum Gene 67: 170–181. [CrossRef] [PubMed] [Google Scholar]
  • Qiu F, Li H, Lin H, Ding S, Miyamoto MM. 2016. Phylogeography of the inshore fish, Bostrychus sinensis, along the Pacific coastline of China. Mol Phylogenet Evol 96: 112–117. [Google Scholar]
  • Raymond M, Rousset F. 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J Hered 86: 248–249. [Google Scholar]
  • Raynal JM, Crandall ED, Barber PH, Mahardika GN, Lagman MC, Carpenter KE. 2014. Basin isolation and oceanographic features influencing lineage divergence in the humbug damselfish (Dascyllus aruanus) in the Coral Triangle. B Mar Sci 90: 513–532. [CrossRef] [Google Scholar]
  • Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning. Cold Spring Harbor Laboratory Press, New York. [Google Scholar]
  • Selkoe KA, Toonen RJ. 2011. Marine connectivity: a new look at pelagic larval duration and genetic metrics of dispersal. Mar Ecol Prog Ser 436: 291–305. [Google Scholar]
  • Siyal FK. 2013. Some aspects of biology, in: Molecular Phylogeography and Maximum Sustainable Yield Estimates of Genus Pampus (Family Stromateidae), Ocean University of China, Qingdao. [Google Scholar]
  • Slatkin M. 1987. Gene flow and the geographic structure of natural populations. Science 236: 787–792. [Google Scholar]
  • Sukumaran S, Sebastian W, Gopalakrishnan A. 2017. Genetic population structure and historic demography of Indian mackerel, Rastrelliger kanagurta from Indian peninsular waters. Fish Res 191: 1–9. [Google Scholar]
  • Sun P, Tang BJ. 2018. Low mtDNA variation and shallow population structure of the Chinese pomfret Pampus chinensis along the China coast. J Fish Biol 92: 214–228. [CrossRef] [PubMed] [Google Scholar]
  • Sun P, Tang BJ, Yin F. 2018. Population genetic structure and genetic diversity of Chinese pomfret at the coast of the East China Sea and the South China Sea. Mitochondrial DNA A 29: 643–649. [CrossRef] [Google Scholar]
  • Sun P, Yin F, Gao Q, Shi Z. 2013. Genetic diversity and population structure of silver pomfret (Pampus argenteus) in the Indo–West Pacific revealed by mitochondrial control region sequences. Biochem Syst Ecol 51: 28–36. [Google Scholar]
  • Sun P, Tang BJ, Yin F. 2017. Population genetic structure and genetic diversity of Chinese pomfret at the coast of the East China Sea and the South China Sea. Mitochondrial DNA A 29: 643–649. DOI: 10.1080/24701394.2017.1334773. [Google Scholar]
  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731–2739. [CrossRef] [PubMed] [Google Scholar]
  • Van Oosterhout C, Hutehinson WF, Wills DPM, Shipley P. 2004. Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4: 535–538. [Google Scholar]
  • Wang P, Sun X. 1994. Last glacial maximum in China: comparison between land and sea. Catena 23: 341–353. [CrossRef] [Google Scholar]
  • Wee AKS, Takayama K, Chua JL, Asakawa T, Meenakshisundaram SH, Onrizal Adjie B, Ardli ER, et al. 2015. Genetic differentiation and phylogeography of partially sympatric species complex Rhizophora mucronata Lam. and R. stylosa Griff. using SSR markers. BMC Evol Biol 15: 1–13. [CrossRef] [PubMed] [Google Scholar]
  • Williams ST, Benzie JAH. 1998. Evidence of a biogeographic break between populations of a high dispersal starfish: congruent regions within the Indo–West Pacific defined by color morphs, mtDNA, and allozyme data. Evolution 52: 87–99. [CrossRef] [PubMed] [Google Scholar]
  • Williams SM, Bennett MB, Pepperell JG, Morgan JAT, Ovenden JR. 2015. Spatial genetic subdivision among populations of the highly migratory black marlin Istiompax indica within the central Indo-Pacific. Mar Freshw Res 67: 1205–1214. [Google Scholar]
  • Yamada U, Tokimura M, Hoshino K, Deng S, Zheng Y, Li S, Kim Y, Kim J. 2009. Name and illustrations of fish from the East China Sea and the Yellow Sea: Japanese, Chinese, Korean, Overseas Fishery Cooperation Foundation of Japan, Tokyo, pp. 525–528. [Google Scholar]
  • Yang W, Li J, Yue G. 2006. Multiplex genotyping of novel microsatellites from silver pomfret (Pampus argenteus) and cross-amplification in other pomfret species. Mol Ecol Notes 6: 1073–1075. [Google Scholar]
  • Yeh FC, Yang R, Boyle TJ, Ye Z, Xiyan JM. 2000. PopGene32, Microsoft Windows-based freeware for stock genetic analysis, version 1.32, Molecular Biology and Biotechnology Centre, University of Alberta, Edmonton, Alberta, Canada. [Google Scholar]
  • Yellapu B, Jeffs A, Battaglene S, Lavery DS. 2016. Population subdivision in the tropical spiny lobster Panulirus ornatus throughout its Indo-West Pacific distribution. ICES J Mar Sci 74: 759–768. [Google Scholar]
  • Zeng L, Cheng Q, Chen X. 2012. Microsatellite analysis reveals the population structure and migration patterns of Scomber japonicus (Scombridae) with continuous distribution in the East and South China Seas. Biochem Syst Ecol 42: 83–93. [Google Scholar]
  • Zheng Y, Chen X, Cheng J, Wang Y, Shen X, Chen W. 2003. Biological resources and environment of the continental shelf of East China Sea. Shanghai Science and Technology Press, Shanghai, pp. 379–388. [Google Scholar]

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